Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | SCAB_RS21750 | Not Available | Negative | 5132292 - 5134337 | 75047.6 |
| duf721 domain-containing protein | SCAB_RS21755 | Not Available | Negative | 5134755 - 5135288 | 18841.4 |
| dna replication/repair protein recf | SCAB_RS21760 | Not Available | Negative | 5135285 - 5136409 | 40913.9 |
| phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating) | SCAB_RS21765 | Not Available | Negative | 5136520 - 5137395 | 31410.2 |
| dna polymerase iii subunit beta | SCAB_RS21770 | Not Available | Negative | 5137597 - 5138727 | 39822.4 |
| chromosomal replication initiator protein dnaa | SCAB_RS21775 | Not Available | Negative | 5139761 - 5141785 | 74887.6 |
| 50s ribosomal protein l34 | SCAB_RS45145 | Not Available | Positive | 5142204 - 5142341 | 5240.46 |
| ribonuclease p protein component | SCAB_RS45150 | Not Available | Positive | 5142363 - 5142734 | 13181.2 |
| membrane protein insertion efficiency factor yidd | SCAB_RS21785 | Not Available | Positive | 5142731 - 5143084 | 12889.5 |
| membrane protein insertase yidc | SCAB_RS21790 | Not Available | Positive | 5143088 - 5144353 | 46648.5 |
Pathways
398 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |