Streptomyces scabiei 87.22

Gram-positiveTailedMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces scabiei 87.22. Streptomyces scabiei 87.22 will be used for comparative analysis with other plant pathogenic actinomycetes. (NCBI BioProject: bp_list[1])

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Kitasatosporales
Family	Streptomycetaceae
Genus	Streptomyces
Species	Streptomyces scabiei
Strain	87.22

Profile

Physiology
Gram staining properties	Positive
Shape	Tailed
Mobility	Yes
Flagellar presence	Yes
Number of membranes	Not Available

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Solanum tuberosum, Daucus carota, Raphanus sativus
Cell arrangement	Not Available
Sporulation	Sporulating
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Streptomyces scabiei 87.22, complete sequence.

NC_013929.1

Gene Summary

Adenine Count

1456718 bp

Thymine Count

1440447 bp

Guanine Count

3612627 bp

Cytosine Count

3638903 bp

Genome Length

10148695 bp

Protein-coding Genes

8740 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
nad(p)/fad-dependent oxidoreductase	SCAB_RS00980	Not Available	Negative	238257 - 239483	42934.2
bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit	SCAB_RS00985	Not Available	Negative	239480 - 239842	12549.5
aromatic ring-hydroxylating dioxygenase subunit alpha	SCAB_RS00990	Not Available	Negative	239842 - 241167	49775.5
iclr family transcriptional regulator	SCAB_RS00995	Not Available	Positive	241614 - 242501	31920.2
helix-turn-helix domain-containing protein	SCAB_RS01000	Not Available	Negative	242519 - 243130	21790.9
cation acetate symporter	SCAB_RS01005	Not Available	Negative	243762 - 245345	53603.3
duf485 domain-containing protein	SCAB_RS01010	Not Available	Negative	245342 - 246007	25058.2
hypothetical protein	SCAB_RS01015	Not Available	Negative	246256 - 247329	39338.3
glucose 1-dehydrogenase	SCAB_RS01020	Not Available	Negative	247758 - 248525	26280.1
duf2255 family protein	SCAB_RS01025	Not Available	Negative	248865 - 249245	13539.9

Displaying genes 351 – 360 of 8914 in total

Pathways

530 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism

Ornithine Metabolism

Proline Metabolism

Show All 530 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5	Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6	Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2	`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4	Not available	Average164.117Da Monoisotopic164.0120558Da

Displaying 1–10 of 463 metabolites

Health Effects

Health Condition	Relation	Reference
Scab	Causes	PMC11609053
Common scab	Causes	PMC12542781
Common scab disease	Causes	PMC12648119
Common scab	Causes	PMC8914351

Displaying health effects 1 – 4 of 4 in total