Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SCAB_RS47745 | Not Available | Negative | 3595973 - 3596146 | 5971.69 |
| cpcc family cysteine-rich protein | SCAB_RS15055 | Not Available | Positive | 3596279 - 3596659 | 14646.0 |
| duf6000 family protein | SCAB_RS15060 | Not Available | Positive | 3596901 - 3597530 | 23824.1 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS15065 | Not Available | Negative | 3597710 - 3597889 | 6762.23 |
| thaxtomin biosynthesis cytochrome p450 txtc | SCAB_RS15070 | Not Available | Negative | 3598108 - 3599295 | 43427.1 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS49400 | Not Available | Negative | 3599358 - 3599435 | 2800.21 |
| thaxtomin biosynthesis nrps accessory protein txth | SCAB_RS15075 | Not Available | Negative | 3600056 - 3600253 | 7448.51 |
| thaxtomin non-ribosomal peptide synthetase txtb | SCAB_RS15080 | Not Available | Negative | 3600343 - 3604809 | 160703.0 |
| thaxtomin non-ribosomal peptide synthetase txta | SCAB_RS15085 | Not Available | Negative | 3604857 - 3609233 | 157315.0 |
| cellobiose-binding transcriptional regulator txtr | SCAB_RS15090 | Not Available | Positive | 3610803 - 3611753 | 34116.2 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |