Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix domain-containing protein | SCAB_RS00375 | Not Available | Negative | 89358 - 89930 | 20931.7 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS00380 | Not Available | Negative | 90026 - 91265 | 45974.5 |
| transposase | SCAB_RS00385 | Not Available | Positive | 91614 - 91922 | 11655.9 |
| is3 family transposase | SCAB_RS00390 | Not Available | Positive | 91919 - 92836 | 34719.3 |
| hypothetical protein | SCAB_RS00395 | Not Available | Negative | 92979 - 93149 | 6381.28 |
| hypothetical protein | SCAB_RS48945 | Not Available | Negative | 93219 - 93344 | 4361.24 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS00400 | Not Available | Positive | 93663 - 94580 | 33460.9 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS44205 | Not Available | Negative | 94673 - 95693 | 36849.1 |
| hypothetical protein | SCAB_RS44210 | Not Available | Positive | 96057 - 96224 | 6003.2 |
| flavin monoamine oxidase family protein | SCAB_RS00410 | Not Available | Negative | 96623 - 98653 | 74194.8 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |