Streptomyces scabiei 87.22

Gram-positiveTailedMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces scabiei 87.22. Streptomyces scabiei 87.22 will be used for comparative analysis with other plant pathogenic actinomycetes. (NCBI BioProject: bp_list[1])

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Kitasatosporales
Family	Streptomycetaceae
Genus	Streptomyces
Species	Streptomyces scabiei
Strain	87.22

Profile

Physiology
Gram staining properties	Positive
Shape	Tailed
Mobility	Yes
Flagellar presence	Yes
Number of membranes	Not Available

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Solanum tuberosum, Daucus carota, Raphanus sativus
Cell arrangement	Not Available
Sporulation	Sporulating
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Streptomyces scabiei 87.22, complete sequence.

NC_013929.1

Gene Summary

Adenine Count

1456718 bp

Thymine Count

1440447 bp

Guanine Count

3612627 bp

Cytosine Count

3638903 bp

Genome Length

10148695 bp

Protein-coding Genes

8740 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
abc transporter substrate-binding protein	SCAB_RS00255	Not Available	Positive	56281 - 57648	47786.5
carbohydrate abc transporter permease	SCAB_RS00260	Not Available	Positive	57691 - 58704	35055.8
carbohydrate abc transporter permease	SCAB_RS00265	Not Available	Positive	58704 - 59540	29570.8
glycosyl hydrolase family 95 catalytic domain-containing protein	SCAB_RS00270	Not Available	Positive	59537 - 62071	92338.6
hypothetical protein	SCAB_RS47620	Not Available	Positive	62056 - 62211	5193.07
bnr repeat-containing protein	SCAB_RS00275	Not Available	Positive	63202 - 65919	96306.5
cobalt-precorrin-5b (c(1))-methyltransferase	SCAB_RS44160	Not Available	Positive	66183 - 66429	8746.45
helix-turn-helix domain-containing protein	SCAB_RS00280	Not Available	Negative	66571 - 67704	39026.6
alpha/beta hydrolase	SCAB_RS00285	Not Available	Negative	67954 - 68928	34582.1
alpha-l-fucosidase	SCAB_RS00290	Not Available	Positive	70367 - 72415	74828.5

Displaying genes 191 – 200 of 8914 in total

Pathways

530 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism

Ornithine Metabolism

Proline Metabolism

Show All 530 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5	Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6	Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2	`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4	Not available	Average164.117Da Monoisotopic164.0120558Da

Displaying 1–10 of 463 metabolites

Health Effects

Health Condition	Relation	Reference
Scab	Causes	PMC11609053
Common scab	Causes	PMC12542781
Common scab disease	Causes	PMC12648119
Common scab	Causes	PMC8914351

Displaying health effects 1 – 4 of 4 in total