Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thua domain-containing protein | SCAB_RS06445 | Not Available | Positive | 1517663 - 1520143 | 89045.6 |
| ompl47-type beta-barrel domain-containing protein | SCAB_RS06450 | Not Available | Positive | 1520143 - 1522347 | 78091.3 |
| heat repeat domain-containing protein | SCAB_RS06455 | Not Available | Positive | 1522452 - 1524581 | 75149.5 |
| non-homologous end-joining dna ligase | SCAB_RS06460 | Not Available | Negative | 1524643 - 1525653 | 37704.6 |
| atp-dependent dna ligase | SCAB_RS06465 | Not Available | Positive | 1525742 - 1526818 | 40228.2 |
| zinc-dependent alcohol dehydrogenase | SCAB_RS06470 | Not Available | Negative | 1526866 - 1528056 | 42647.2 |
| duf3048 domain-containing protein | SCAB_RS06475 | Not Available | Positive | 1528187 - 1529188 | 35194.1 |
| marr family winged helix-turn-helix transcriptional regulator | SCAB_RS06480 | Not Available | Negative | 1529200 - 1529661 | 17214.6 |
| protocatechuate 3,4-dioxygenase subunit beta | SCAB_RS06485 | Not Available | Positive | 1530003 - 1530776 | 29125.8 |
| protocatechuate 3,4-dioxygenase subunit alpha | SCAB_RS06490 | Not Available | Positive | 1530783 - 1531388 | 21637.6 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |