Grimontia hollisae CIP 101886

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Grimontia

Description

Grimontia hollisae CIP 101886 is a gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, with a temperature preference of around 30-37°C. This microbe is classified as a chemoheterotroph, utilizing organic compounds as both energy and carbon sources. It has been primarily isolated from marine environments, particularly in association with various fish species and sediment, showcasing its adaptability and ecological role within aquatic ecosystems. In terms of oxygen requirements, Grimontia hollisae is categorized as a facultative anaerobe, enabling it to survive in both oxygen-rich and oxygen-depleted environments. The gram-negative staining indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides. This structural distinction is critical for its pathogenicity and interactions within its environment, influencing its resistance to antibiotics and highlighting its ecological versatility. As a rod-shaped bacterium, Grimontia hollisae exhibits motility that aids in colonization and nutrient acquisition in dynamic marine settings. Grimontia hollisae's role as a chemoheterotroph is vital in nutrient cycling within its habitat, as it breaks down organic matter, contributing to the overall health of marine ecosystems. Its facultative anaerobic nature allows it to exploit varying oxygen conditions, supporting its survival and proliferation in diverse locales, from well-oxygenated waters to oxygen-depleted sediments. Notably, Grimontia hollisae is part of a broader family of bacteria that includes various species important for bioremediation and aquaculture. Its ability to engage in complex microbial interactions within its environment underscores its significance in marine biology and ecology, making it an important focus for studies on bacterial diversity and marine health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusGrimontia
SpeciesGrimontia hollisae
StrainCIP 101886

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Grimontia hollisae CIP 101886 VHA.Contig67, whole genome shotgun

Gene Summary

Adenine Count

1021931 bp

Thymine Count

1000550 bp

Guanine Count

952827 bp

Cytosine Count

1027478 bp

Genome Length

4002786 bp

Protein-coding Genes

3536 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein a precursorVHA_002682Not AvailableNegative2951491 - 295248636096.4
hypothetical proteinVHA_002683Not AvailableNegative2952821 - 295351025738.1
protein of unknown function duf6 transmembraneVHA_002684Not AvailablePositive2953707 - 295461232146.1
dna polymerase iiVHA_002685Not AvailablePositive2954693 - 295705089434.7
hypothetical proteinVHA_002686Not AvailableNegative2957118 - 295742911330.2
hypothetical proteinVHA_002687Not AvailablePositive2957765 - 29578783818.93
hypothetical proteinVHA_002688Not AvailablePositive2957899 - 29580214677.59
predicted d-lactate dehydrogenase fe-s protein fad/fmn-containingVHA_002689Not AvailableNegative2958127 - 2960961103281.0
predicted l-lactate dehydrogenase hypothetical protein subunit ykggVHA_002690Not AvailableNegative2960964 - 296163824733.3
predicted l-lactate dehydrogenase iron-sulfur cluster-binding subunit ykgfVHA_002691Not AvailableNegative2961635 - 296306552571.9

Displaying genes 2771 – 2780 of 3686 in total

Metabolites

529 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 529 metabolites

Health Effects

No health effects information available for this bacterium.