Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04490 | Not Available | Positive | 972061 - 973047 | 35085.6 |
| carboxymuconolactone decarboxylase family protein | RHPLAN_RS04495 | Not Available | Positive | 973047 - 973451 | 14818.7 |
| alpha/beta fold hydrolase | RHPLAN_RS04500 | Not Available | Positive | 973451 - 974518 | 38659.3 |
| nad(p)-binding protein | RHPLAN_RS40085 | Not Available | Positive | 974533 - 974625 | 3143.97 |
| hypothetical protein | RHPLAN_RS40090 | Not Available | Positive | 974659 - 974874 | 7910.59 |
| eal domain-containing protein | RHPLAN_RS04510 | Not Available | Positive | 975102 - 977744 | 96095.9 |
| duf2336 domain-containing protein | RHPLAN_RS04515 | Not Available | Positive | 977758 - 978843 | 39690.6 |
| pilz domain-containing protein | RHPLAN_RS04520 | Not Available | Positive | 978851 - 979102 | 9508.57 |
| is630 family transposase | RHPLAN_RS38185 | Not Available | Negative | 979109 - 980057 | 35933.7 |
| amidohydrolase family protein | RHPLAN_RS04535 | Not Available | Negative | 980623 - 981570 | 34764.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.