Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04440 | Not Available | Negative | 960608 - 961576 | 33188.0 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04445 | Not Available | Negative | 961573 - 962541 | 33485.6 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04450 | Not Available | Negative | 962544 - 963533 | 34228.9 |
| tmem143 family protein | RHPLAN_RS04455 | Not Available | Negative | 963673 - 964953 | 48222.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04460 | Not Available | Negative | 965031 - 965996 | 34548.9 |
| transketolase | RHPLAN_RS04465 | Not Available | Negative | 966110 - 968512 | 88175.9 |
| lrp/asnc family transcriptional regulator | RHPLAN_RS04470 | Not Available | Positive | 968642 - 969112 | 17880.9 |
| mgtc/sapb family protein | RHPLAN_RS04475 | Not Available | Positive | 969162 - 969878 | 25091.4 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS04480 | Not Available | Negative | 970091 - 971077 | 34776.6 |
| class ii aldolase/adducin family protein | RHPLAN_RS04485 | Not Available | Negative | 971177 - 971896 | 26755.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.