Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | RHPLAN_RS03990 | Not Available | Positive | 865192 - 865872 | 24905.3 |
| 3-hydroxybenzoate 6-monooxygenase | RHPLAN_RS03995 | Not Available | Negative | 865957 - 867156 | 43385.3 |
| voc family protein | RHPLAN_RS04000 | Not Available | Negative | 867160 - 867777 | 22829.4 |
| is5/is1182 family transposase | RHPLAN_RS04005 | Not Available | Positive | 868042 - 869100 | 39438.8 |
| cobaltochelatase subunit cobt | RHPLAN_RS04010 | Not Available | Positive | 869275 - 871179 | 71085.4 |
| esterase-like activity of phytase family protein | RHPLAN_RS04015 | Not Available | Positive | 871349 - 872371 | 36517.2 |
| giy-yig nuclease family protein | RHPLAN_RS04020 | Not Available | Positive | 872444 - 872731 | 11440.5 |
| 50s ribosomal protein l28 | RHPLAN_RS04025 | Not Available | Negative | 872856 - 873146 | 10589.1 |
| duf3108 domain-containing protein | RHPLAN_RS04030 | Not Available | Positive | 873406 - 874287 | 30539.9 |
| helicase-related protein | RHPLAN_RS04035 | Not Available | Positive | 874657 - 878073 | 123974.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.