Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fic family protein | RHPLAN_RS38165 | Not Available | Positive | 856258 - 856635 | 14401.4 |
| site-specific tyrosine recombinase xerd | RHPLAN_RS03945 | Not Available | Negative | 856833 - 857771 | 34631.6 |
| histidine kinase | RHPLAN_RS03950 | Not Available | Negative | 857788 - 857937 | 5275.52 |
| shikimate kinase | RHPLAN_RS03955 | Not Available | Positive | 858026 - 858658 | 22814.4 |
| 3-dehydroquinate synthase | RHPLAN_RS03960 | Not Available | Positive | 858655 - 859818 | 40964.4 |
| hlyc/corc family transporter | RHPLAN_RS03965 | Not Available | Positive | 859815 - 861110 | 47088.7 |
| bola family transcriptional regulator | RHPLAN_RS38170 | Not Available | Negative | 861201 - 861479 | 9947.72 |
| j domain-containing protein | RHPLAN_RS03975 | Not Available | Positive | 861635 - 862249 | 23394.4 |
| amidase | RHPLAN_RS03980 | Not Available | Negative | 862288 - 863775 | 52049.1 |
| mfs transporter | RHPLAN_RS03985 | Not Available | Negative | 863871 - 865085 | 42192.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.