Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | RHPLAN_RS37385 | Not Available | Negative | 8047578 - 8048684 | 41653.8 |
| abc transporter substrate-binding protein | RHPLAN_RS37390 | Not Available | Positive | 8049036 - 8050241 | 42973.8 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS37395 | Not Available | Positive | 8050780 - 8051643 | 30829.4 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS37400 | Not Available | Positive | 8051640 - 8052671 | 36776.7 |
| abc transporter atp-binding protein | RHPLAN_RS37405 | Not Available | Positive | 8052668 - 8053423 | 27200.3 |
| abc transporter atp-binding protein | RHPLAN_RS37410 | Not Available | Positive | 8053416 - 8054135 | 25664.1 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS37415 | Not Available | Positive | 8054369 - 8055346 | 33519.8 |
| gfo/idh/moca family oxidoreductase | RHPLAN_RS37420 | Not Available | Negative | 8055483 - 8056439 | 35157.2 |
| class iii extradiol dioxygenase subunit beta | RHPLAN_RS37425 | Not Available | Negative | 8056510 - 8057472 | 35290.0 |
| protocatechuate 4,5-dioxygenase subunit alpha | RHPLAN_RS37430 | Not Available | Negative | 8057465 - 8057932 | 17542.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.