Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | RHPLAN_RS03680 | Not Available | Positive | 806074 - 807276 | 43771.2 |
| abc transporter substrate-binding protein | RHPLAN_RS03685 | Not Available | Positive | 807302 - 808279 | 35181.9 |
| abc transporter atp-binding protein | RHPLAN_RS03690 | Not Available | Positive | 808301 - 809149 | 31934.9 |
| abc transporter permease | RHPLAN_RS03695 | Not Available | Positive | 809146 - 809898 | 27252.3 |
| creatininase family protein | RHPLAN_RS03700 | Not Available | Negative | 810038 - 810829 | 29020.0 |
| rida family protein | RHPLAN_RS03705 | Not Available | Positive | 810871 - 811263 | 14410.6 |
| thiamine pyrophosphate-binding protein | RHPLAN_RS03710 | Not Available | Positive | 811283 - 811798 | 18836.8 |
| thiamine pyrophosphate-dependent enzyme | RHPLAN_RS03715 | Not Available | Positive | 811795 - 812397 | 21653.2 |
| flavin reductase family protein | RHPLAN_RS03720 | Not Available | Negative | 812413 - 813060 | 23668.4 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS03725 | Not Available | Negative | 813092 - 814201 | 39392.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.