Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr02186 family protein | RHPLAN_RS34505 | Not Available | Positive | 7422852 - 7423637 | 28634.6 |
| substrate-binding domain-containing protein | RHPLAN_RS34510 | Not Available | Negative | 7423655 - 7424410 | 26389.3 |
| ligase-associated dna damage response endonuclease pdem | RHPLAN_RS34515 | Not Available | Negative | 7424472 - 7425200 | 25895.0 |
| ligase-associated dna damage response dexh box helicase | RHPLAN_RS34520 | Not Available | Negative | 7425284 - 7427860 | 95002.0 |
| abc transporter substrate-binding protein | RHPLAN_RS34525 | Not Available | Negative | 7427873 - 7428874 | 35115.8 |
| quinone-dependent dihydroorotate dehydrogenase | RHPLAN_RS34530 | Not Available | Positive | 7428964 - 7430061 | 39100.4 |
| class i sam-dependent methyltransferase | RHPLAN_RS34535 | Not Available | Negative | 7430190 - 7431104 | 32592.7 |
| ligase-associated dna damage response exonuclease | RHPLAN_RS34540 | Not Available | Positive | 7431159 - 7432208 | 37491.4 |
| hypothetical protein | RHPLAN_RS34545 | Not Available | Positive | 7432205 - 7432735 | 19677.9 |
| cisplatin damage response atp-dependent dna ligase | RHPLAN_RS34550 | Not Available | Positive | 7432737 - 7434404 | 62039.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.