Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RHPLAN_RS33875 | Not Available | Positive | 7264403 - 7264636 | 8906.61 |
| dna cytosine methyltransferase | RHPLAN_RS38815 | Not Available | Negative | 7264901 - 7265851 | 35580.9 |
| very short patch repair endonuclease | RHPLAN_RS38820 | Not Available | Negative | 7265871 - 7266335 | 17978.8 |
| atp-binding protein | RHPLAN_RS38825 | Not Available | Positive | 7266428 - 7267891 | 53921.7 |
| z1 domain-containing protein | RHPLAN_RS33895 | Not Available | Positive | 7267888 - 7270704 | 104207.0 |
| pd-(d/e)xk motif protein | RHPLAN_RS38830 | Not Available | Positive | 7270688 - 7271608 | 33465.1 |
| aipr family protein | RHPLAN_RS33905 | Not Available | Positive | 7271634 - 7273697 | 75903.3 |
| hypothetical protein | RHPLAN_RS39950 | Not Available | Positive | 7273802 - 7274353 | 20344.0 |
| helix-turn-helix domain-containing protein | RHPLAN_RS33920 | Not Available | Positive | 7274398 - 7274790 | 14437.5 |
| right-handed parallel beta-helix repeat-containing protein | RHPLAN_RS33925 | Not Available | Positive | 7274995 - 7277538 | 88325.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.