Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-carboxy-cis,cis-muconate cycloisomerase | RHPLAN_RS33390 | Not Available | Positive | 7154126 - 7155478 | 50294.9 |
| coxg family protein | RHPLAN_RS33395 | Not Available | Positive | 7155735 - 7156193 | 16645.8 |
| xanthine dehydrogenase family protein subunit m | RHPLAN_RS33400 | Not Available | Positive | 7156193 - 7157062 | 30601.4 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RHPLAN_RS33405 | Not Available | Positive | 7157062 - 7159380 | 84327.1 |
| (2fe-2s)-binding protein | RHPLAN_RS33410 | Not Available | Positive | 7159382 - 7159870 | 17323.9 |
| mfs transporter | RHPLAN_RS33415 | Not Available | Positive | 7159950 - 7161290 | 48440.7 |
| fad-dependent oxidoreductase | RHPLAN_RS33420 | Not Available | Positive | 7161374 - 7163071 | 60157.3 |
| 2fe-2s iron-sulfur cluster-binding protein | RHPLAN_RS33425 | Not Available | Positive | 7163082 - 7163429 | 12967.6 |
| ubid family decarboxylase | RHPLAN_RS33430 | Not Available | Positive | 7163496 - 7165022 | 55895.9 |
| efflux rnd transporter permease subunit | RHPLAN_RS33435 | Not Available | Negative | 7165103 - 7168246 | 113333.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.