Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidohydrolase family protein | RHPLAN_RS33340 | Not Available | Negative | 7142876 - 7144327 | 51709.3 |
| trap transporter large permease | RHPLAN_RS33345 | Not Available | Negative | 7144447 - 7145793 | 47801.9 |
| trap transporter small permease | RHPLAN_RS33350 | Not Available | Negative | 7145790 - 7146341 | 20077.7 |
| trap transporter substrate-binding protein dctp | RHPLAN_RS33355 | Not Available | Negative | 7146374 - 7147399 | 36880.3 |
| mandelate racemase/muconate lactonizing enzyme family protein | RHPLAN_RS39925 | Not Available | Positive | 7147572 - 7148729 | 40868.0 |
| caib/baif coa-transferase family protein | RHPLAN_RS33365 | Not Available | Positive | 7148777 - 7149961 | 42528.2 |
| carboxymuconolactone decarboxylase family protein | RHPLAN_RS33370 | Not Available | Positive | 7150012 - 7150545 | 20069.4 |
| nad(p)-dependent oxidoreductase | RHPLAN_RS33375 | Not Available | Positive | 7150584 - 7151669 | 39528.7 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS33380 | Not Available | Positive | 7151666 - 7152637 | 33914.1 |
| coa transferase | RHPLAN_RS33385 | Not Available | Positive | 7152677 - 7154059 | 48879.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.