Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 1 glutamine amidotransferase | RHPLAN_RS33240 | Not Available | Positive | 7119098 - 7119964 | 31178.2 |
| sdr family nad(p)-dependent oxidoreductase | RHPLAN_RS33245 | Not Available | Positive | 7119967 - 7120656 | 23662.4 |
| malonic semialdehyde reductase | RHPLAN_RS33250 | Not Available | Negative | 7120663 - 7121253 | 21945.2 |
| malonyl-coa decarboxylase | RHPLAN_RS33255 | Not Available | Negative | 7121362 - 7122735 | 51419.2 |
| caib/baif coa-transferase family protein | RHPLAN_RS33260 | Not Available | Positive | 7122928 - 7124103 | 41469.0 |
| vps10 domain-containing protein | RHPLAN_RS33265 | Not Available | Negative | 7124807 - 7125949 | 41377.3 |
| mbl fold metallo-hydrolase | RHPLAN_RS33270 | Not Available | Positive | 7126039 - 7127181 | 40794.9 |
| duf563 domain-containing protein | RHPLAN_RS33275 | Not Available | Negative | 7127195 - 7128430 | 46000.9 |
| substrate-binding domain-containing protein | RHPLAN_RS33280 | Not Available | Positive | 7128743 - 7129477 | 25889.7 |
| bifunctional diguanylate cyclase/phosphodiesterase | RHPLAN_RS33285 | Not Available | Positive | 7129474 - 7131972 | 91495.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.