Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS03285 | Not Available | Positive | 707741 - 708712 | 34167.7 |
| llm class flavin-dependent oxidoreductase | RHPLAN_RS03290 | Not Available | Positive | 708744 - 710045 | 47696.6 |
| formyltransferase family protein | RHPLAN_RS03295 | Not Available | Negative | 710064 - 710729 | 24676.8 |
| hypothetical protein | RHPLAN_RS03300 | Not Available | Negative | 710813 - 712201 | 50513.2 |
| rna polymerase sigma factor | RHPLAN_RS03305 | Not Available | Positive | 712768 - 713460 | 26190.0 |
| flagellin | RHPLAN_RS03310 | Not Available | Positive | 713598 - 714422 | 27432.5 |
| flagellar filament capping protein flid | RHPLAN_RS03315 | Not Available | Positive | 714505 - 716223 | 58217.4 |
| flagellar export chaperone flis | RHPLAN_RS03320 | Not Available | Positive | 716301 - 716708 | 14711.8 |
| hypothetical protein | RHPLAN_RS39000 | Not Available | Positive | 716876 - 717304 | 15749.8 |
| hypothetical protein | RHPLAN_RS40420 | Not Available | Negative | 717285 - 717761 | 17556.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.