Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | RHPLAN_RS32885 | Not Available | Positive | 7044334 - 7044876 | 19471.4 |
| llm class flavin-dependent oxidoreductase | RHPLAN_RS32890 | Not Available | Positive | 7044876 - 7045907 | 37371.3 |
| hypothetical protein | RHPLAN_RS32895 | Not Available | Positive | 7046117 - 7048444 | 84319.8 |
| acetyl-coa acetyltransferase | RHPLAN_RS32900 | Not Available | Negative | 7049215 - 7050381 | 40999.4 |
| d-alanyl-d-alanine carboxypeptidase family protein | RHPLAN_RS38765 | Not Available | Positive | 7050642 - 7052138 | 52125.8 |
| long-chain-acyl-coa synthetase | RHPLAN_RS32910 | Not Available | Positive | 7052273 - 7054069 | 66403.4 |
| duf924 family protein | RHPLAN_RS32915 | Not Available | Positive | 7054066 - 7054608 | 20355.9 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS32920 | Not Available | Positive | 7054718 - 7055695 | 33621.9 |
| tripartite tricarboxylate transporter tctb family protein | RHPLAN_RS32925 | Not Available | Positive | 7055763 - 7056239 | 16260.5 |
| tripartite tricarboxylate transporter permease | RHPLAN_RS32930 | Not Available | Positive | 7056249 - 7057748 | 51885.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.