Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS32590 | Not Available | Positive | 6975890 - 6976873 | 34776.2 |
| is5/is1182 family transposase | RHPLAN_RS32595 | Not Available | Negative | 6977017 - 6977727 | 26970.3 |
| pyrroloquinoline quinone biosynthesis protein pqqb | RHPLAN_RS32600 | Not Available | Negative | 6977753 - 6978655 | 31890.4 |
| pyrroloquinoline quinone precursor peptide pqqa | RHPLAN_RS38760 | Not Available | Negative | 6978679 - 6978777 | 3561.28 |
| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | RHPLAN_RS32605 | Not Available | Negative | 6978937 - 6980277 | 46260.7 |
| nad-dependent succinate-semialdehyde dehydrogenase | RHPLAN_RS32610 | Not Available | Negative | 6980414 - 6981871 | 51981.5 |
| alpha-ketoacid dehydrogenase subunit beta | RHPLAN_RS32615 | Not Available | Negative | 6982011 - 6982991 | 35182.7 |
| thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alpha | RHPLAN_RS32620 | Not Available | Negative | 6982979 - 6983998 | 36869.9 |
| dmt family transporter | RHPLAN_RS32625 | Not Available | Negative | 6984077 - 6984994 | 33277.4 |
| hypothetical protein | RHPLAN_RS32630 | Not Available | Positive | 6985414 - 6985608 | 7052.94 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.