Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cmpa/nrta family abc transporter substrate-binding protein | RHPLAN_RS32340 | Not Available | Negative | 6927758 - 6929143 | 50684.8 |
| hypothetical protein | RHPLAN_RS32345 | Not Available | Negative | 6929372 - 6929977 | 20736.9 |
| hypothetical protein | RHPLAN_RS32350 | Not Available | Negative | 6930071 - 6930691 | 21735.3 |
| shikimate dehydrogenase | RHPLAN_RS32355 | Not Available | Negative | 6930781 - 6931617 | 29840.7 |
| sdr family nad(p)-dependent oxidoreductase | RHPLAN_RS32360 | Not Available | Negative | 6931608 - 6932396 | 27389.8 |
| fumarylacetoacetate hydrolase family protein | RHPLAN_RS32365 | Not Available | Negative | 6932415 - 6933275 | 31403.8 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | RHPLAN_RS32370 | Not Available | Positive | 6933366 - 6934352 | 37442.3 |
| aaa family atpase | RHPLAN_RS32375 | Not Available | Positive | 6934409 - 6934963 | 20113.9 |
| 2-hydroxyacid dehydrogenase | RHPLAN_RS32380 | Not Available | Positive | 6934995 - 6935900 | 32833.2 |
| rok family protein | RHPLAN_RS32385 | Not Available | Positive | 6935980 - 6937041 | 38694.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.