Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maly/patb family protein | RHPLAN_RS32190 | Not Available | Negative | 6896369 - 6897556 | 42812.2 |
| Trna-glu | Not Available | Not Available | Positive | 6897858 - 6897933 | Not Available |
| hypothetical protein | RHPLAN_RS32200 | Not Available | Negative | 6898020 - 6898367 | 12456.2 |
| rlua family pseudouridine synthase | RHPLAN_RS32205 | Not Available | Positive | 6898379 - 6899455 | 38408.0 |
| rna polymerase sigma factor rpoh | RHPLAN_RS32210 | Not Available | Positive | 6899650 - 6900561 | 34289.1 |
| lytic transglycosylase domain-containing protein | RHPLAN_RS38755 | Not Available | Negative | 6900835 - 6901326 | 18129.4 |
| duf992 domain-containing protein | RHPLAN_RS32220 | Not Available | Positive | 6901896 - 6902408 | 17781.2 |
| helix-turn-helix transcriptional regulator | RHPLAN_RS32225 | Not Available | Positive | 6902623 - 6902964 | 12568.1 |
| srpbcc domain-containing protein | RHPLAN_RS32230 | Not Available | Positive | 6903013 - 6903495 | 18108.6 |
| hypothetical protein | RHPLAN_RS32235 | Not Available | Negative | 6903589 - 6905205 | 58731.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.