Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | RHPLAN_RS32080 | Not Available | Negative | 6874241 - 6874747 | 17788.5 |
| heme-binding protein | RHPLAN_RS32085 | Not Available | Negative | 6874960 - 6875448 | 15830.0 |
| response regulator transcription factor | RHPLAN_RS32090 | Not Available | Negative | 6875569 - 6876162 | 21661.2 |
| sensor histidine kinase | RHPLAN_RS32095 | Not Available | Negative | 6876159 - 6877754 | 56479.6 |
| mmge/prpd family protein | RHPLAN_RS32100 | Not Available | Negative | 6877903 - 6879333 | 50162.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS32105 | Not Available | Negative | 6879355 - 6880365 | 35598.9 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS32110 | Not Available | Negative | 6880390 - 6881340 | 34319.4 |
| mandelate racemase/muconate lactonizing enzyme family protein | RHPLAN_RS32115 | Not Available | Negative | 6881385 - 6882536 | 42601.0 |
| lysr family transcriptional regulator | RHPLAN_RS38750 | Not Available | Positive | 6882679 - 6883626 | 34656.3 |
| llm class flavin-dependent oxidoreductase | RHPLAN_RS32135 | Not Available | Negative | 6883663 - 6885027 | 49938.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.