Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal-body ms-ring/collar protein flif | RHPLAN_RS31680 | Not Available | Positive | 6785969 - 6787642 | 59782.7 |
| flagellar motor switch protein flig | RHPLAN_RS31685 | Not Available | Positive | 6787672 - 6788754 | 40278.5 |
| flih/sctl family protein | RHPLAN_RS31690 | Not Available | Positive | 6788766 - 6789410 | 22937.4 |
| flagellar motor switch protein flin | RHPLAN_RS31695 | Not Available | Positive | 6789407 - 6789760 | 12492.9 |
| sigma-54 dependent transcriptional regulator | RHPLAN_RS31700 | Not Available | Positive | 6789842 - 6791206 | 48791.0 |
| abc transporter substrate-binding protein | RHPLAN_RS31705 | Not Available | Negative | 6791287 - 6792174 | 32060.1 |
| duf952 domain-containing protein | RHPLAN_RS31710 | Not Available | Positive | 6792422 - 6792766 | 12478.8 |
| metallophosphoesterase family protein | RHPLAN_RS31715 | Not Available | Positive | 6792850 - 6793581 | 26831.8 |
| efflux rnd transporter periplasmic adaptor subunit | RHPLAN_RS31720 | Not Available | Positive | 6793630 - 6794742 | 39255.0 |
| efflux rnd transporter permease subunit | RHPLAN_RS31725 | Not Available | Positive | 6794812 - 6797952 | 114287.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.