Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | RHPLAN_RS31135 | Not Available | Negative | 6665307 - 6666866 | 56236.7 |
| ferritin-like domain-containing protein | RHPLAN_RS31140 | Not Available | Negative | 6666901 - 6667407 | 18585.3 |
| had domain-containing protein | RHPLAN_RS31145 | Not Available | Negative | 6667525 - 6668016 | 18612.5 |
| duf421 domain-containing protein | RHPLAN_RS31150 | Not Available | Negative | 6668028 - 6668549 | 18981.3 |
| dienelactone hydrolase family protein | RHPLAN_RS31155 | Not Available | Positive | 6668753 - 6669484 | 26349.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS31160 | Not Available | Positive | 6669643 - 6670629 | 34912.8 |
| bug family tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS31165 | Not Available | Positive | 6670743 - 6671714 | 34189.2 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS31170 | Not Available | Positive | 6671770 - 6672726 | 33859.1 |
| zinc-dependent alcohol dehydrogenase family protein | RHPLAN_RS31175 | Not Available | Negative | 6672893 - 6673891 | 34788.3 |
| atp-dependent helicase | RHPLAN_RS31180 | Not Available | Positive | 6674027 - 6676738 | 99704.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.