Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein l,d-transpeptidase family protein | RHPLAN_RS31035 | Not Available | Negative | 6644293 - 6645483 | 43854.0 |
| nf038122 family metalloprotease | RHPLAN_RS31040 | Not Available | Positive | 6645733 - 6647577 | 62062.5 |
| duf2147 domain-containing protein | RHPLAN_RS31045 | Not Available | Positive | 6647607 - 6648230 | 23093.2 |
| hypothetical protein | RHPLAN_RS31050 | Not Available | Positive | 6648370 - 6648579 | 7373.86 |
| fatty acid desaturase | RHPLAN_RS31055 | Not Available | Negative | 6648634 - 6649656 | 38642.2 |
| spermidine synthase | RHPLAN_RS31060 | Not Available | Negative | 6649899 - 6650588 | 24311.4 |
| hypothetical protein | RHPLAN_RS31065 | Not Available | Positive | 6650804 - 6651247 | 16612.9 |
| thioesterase family protein | RHPLAN_RS31070 | Not Available | Positive | 6651361 - 6651879 | 19802.7 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RHPLAN_RS31075 | Not Available | Negative | 6651944 - 6654277 | 82096.1 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS31080 | Not Available | Negative | 6654327 - 6655406 | 37999.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.