Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sspb family protein | RHPLAN_RS30985 | Not Available | Positive | 6631361 - 6631912 | 20225.5 |
| class ii fumarate hydratase | RHPLAN_RS30990 | Not Available | Positive | 6631925 - 6633361 | 51923.4 |
| duf4169 family protein | RHPLAN_RS40670 | Not Available | Positive | 6633467 - 6633910 | 15730.4 |
| ribbon-helix-helix domain-containing protein | RHPLAN_RS31000 | Not Available | Positive | 6633907 - 6634203 | 10650.7 |
| asma-like c-terminal region-containing protein | RHPLAN_RS31005 | Not Available | Negative | 6634183 - 6637716 | 121724.0 |
| fad-linked oxidase c-terminal domain-containing protein | RHPLAN_RS31010 | Not Available | Negative | 6637887 - 6639302 | 50489.8 |
| methanethiol s-methyltransferase | RHPLAN_RS31015 | Not Available | Negative | 6639375 - 6640181 | 30082.4 |
| hypothetical protein | RHPLAN_RS31020 | Not Available | Negative | 6640243 - 6640518 | 9744.77 |
| winged helix-turn-helix domain-containing protein | RHPLAN_RS31025 | Not Available | Positive | 6640804 - 6642369 | 58199.1 |
| tade/tadg family type iv pilus assembly protein | RHPLAN_RS31030 | Not Available | Negative | 6642433 - 6643776 | 47444.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.