Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmc family oxidoreductase | RHPLAN_RS29905 | Not Available | Positive | 6396429 - 6398048 | 59194.4 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS29910 | Not Available | Positive | 6398202 - 6399137 | 33201.2 |
| hypothetical protein | RHPLAN_RS29915 | Not Available | Positive | 6399201 - 6399923 | 26540.5 |
| abc transporter substrate-binding protein | RHPLAN_RS29920 | Not Available | Negative | 6399943 - 6400932 | 35835.1 |
| abc transporter atp-binding protein | RHPLAN_RS29925 | Not Available | Positive | 6401151 - 6401960 | 30205.9 |
| abc transporter permease | RHPLAN_RS29930 | Not Available | Positive | 6401957 - 6402751 | 28381.8 |
| abc transporter substrate-binding protein | RHPLAN_RS29935 | Not Available | Positive | 6402768 - 6403817 | 37506.4 |
| marr family winged helix-turn-helix transcriptional regulator | RHPLAN_RS29940 | Not Available | Negative | 6404179 - 6404709 | 19815.7 |
| amidohydrolase family protein | RHPLAN_RS29945 | Not Available | Negative | 6404857 - 6406278 | 51402.3 |
| rida family protein | RHPLAN_RS29950 | Not Available | Negative | 6406374 - 6406781 | 14804.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.