Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RHPLAN_RS29710 | Not Available | Positive | 6346632 - 6347771 | 40630.0 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS29715 | Not Available | Positive | 6347797 - 6348669 | 29434.2 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS29720 | Not Available | Positive | 6348669 - 6349625 | 33024.5 |
| abc transporter atp-binding protein | RHPLAN_RS29725 | Not Available | Positive | 6349622 - 6350410 | 28029.9 |
| abc transporter atp-binding protein | RHPLAN_RS29730 | Not Available | Positive | 6350397 - 6351098 | 24561.2 |
| thioesterase family protein | RHPLAN_RS29735 | Not Available | Positive | 6351106 - 6351519 | 14987.2 |
| enoyl-coa hydratase/isomerase family protein | RHPLAN_RS29740 | Not Available | Negative | 6351521 - 6352861 | 49612.6 |
| phenylacetate--coa ligase family protein | RHPLAN_RS29745 | Not Available | Positive | 6352989 - 6354278 | 46674.5 |
| efflux rnd transporter permease subunit | RHPLAN_RS29750 | Not Available | Negative | 6354275 - 6357403 | 111792.0 |
| efflux rnd transporter periplasmic adaptor subunit | RHPLAN_RS29755 | Not Available | Negative | 6357425 - 6358519 | 38976.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.