Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | RHPLAN_RS29660 | Not Available | Positive | 6335646 - 6336845 | 44447.4 |
| mfs transporter | RHPLAN_RS29665 | Not Available | Positive | 6337109 - 6338353 | 44530.4 |
| cupin domain-containing protein | RHPLAN_RS29670 | Not Available | Positive | 6338517 - 6338990 | 16996.2 |
| crp/fnr family transcriptional regulator | RHPLAN_RS29675 | Not Available | Positive | 6339259 - 6339774 | 18220.9 |
| duf3455 domain-containing protein | RHPLAN_RS29680 | Not Available | Negative | 6339836 - 6340333 | 16903.2 |
| oxaloacetate decarboxylase | RHPLAN_RS29685 | Not Available | Negative | 6340348 - 6341208 | 30719.2 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS29690 | Not Available | Negative | 6342110 - 6343087 | 33778.0 |
| gtp cyclohydrolase ii | RHPLAN_RS29695 | Not Available | Positive | 6343419 - 6344675 | 46272.2 |
| urc4/urg3 family protein | RHPLAN_RS29700 | Not Available | Positive | 6344678 - 6345904 | 44694.8 |
| uracil phosphoribosyltransferase | RHPLAN_RS29705 | Not Available | Positive | 6345918 - 6346547 | 22729.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.