Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-3b synthase | RHPLAN_RS29610 | Not Available | Negative | 6323507 - 6324751 | 42094.0 |
| cobaltochelatase subunit cobn | RHPLAN_RS29615 | Not Available | Negative | 6324748 - 6328071 | 118088.0 |
| cobalamin biosynthesis protein cobw | RHPLAN_RS29620 | Not Available | Negative | 6328075 - 6329109 | 36499.9 |
| duf1636 domain-containing protein | RHPLAN_RS29625 | Not Available | Negative | 6329106 - 6329531 | 15030.8 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | RHPLAN_RS29630 | Not Available | Positive | 6329973 - 6330497 | 19156.0 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | RHPLAN_RS29635 | Not Available | Positive | 6330494 - 6331108 | 22479.0 |
| cobyric acid synthase | RHPLAN_RS29640 | Not Available | Positive | 6331190 - 6332647 | 51057.6 |
| adenosylcobinamide-phosphate synthase cbib | RHPLAN_RS29645 | Not Available | Negative | 6332631 - 6333599 | 34017.1 |
| threonine-phosphate decarboxylase cobd | RHPLAN_RS29650 | Not Available | Positive | 6333592 - 6334629 | 36488.9 |
| arylmalonate decarboxylase | RHPLAN_RS29655 | Not Available | Negative | 6334808 - 6335560 | 27392.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.