Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | RHPLAN_RS29560 | Not Available | Positive | 6315102 - 6316154 | 35903.2 |
| cobyrinate a,c-diamide synthase | RHPLAN_RS29565 | Not Available | Negative | 6316151 - 6317467 | 45922.0 |
| uroporphyrinogen-iii c-methyltransferase | RHPLAN_RS29570 | Not Available | Negative | 6317464 - 6318258 | 27582.8 |
| precorrin-4 c(11)-methyltransferase | RHPLAN_RS29575 | Not Available | Negative | 6318280 - 6319038 | 26772.6 |
| cobalamin biosynthesis protein | RHPLAN_RS29580 | Not Available | Negative | 6319035 - 6319439 | 12724.6 |
| bifunctional cobalt-precorrin-7 (c(5))-methyltransferase/cobalt-precorrin-6b (c(15))-methyltransferase | RHPLAN_RS29585 | Not Available | Negative | 6319418 - 6320665 | 43617.6 |
| cobalt-precorrin-6a reductase | RHPLAN_RS29590 | Not Available | Positive | 6320664 - 6321428 | 26901.3 |
| precorrin-3b c(17)-methyltransferase | RHPLAN_RS29595 | Not Available | Negative | 6321395 - 6322156 | 26354.6 |
| precorrin-2 c(20)-methyltransferase | RHPLAN_RS29600 | Not Available | Negative | 6322153 - 6322878 | 26216.6 |
| precorrin-8x methylmutase | RHPLAN_RS29605 | Not Available | Negative | 6322875 - 6323510 | 21923.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.