Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein bugd | RHPLAN_RS29460 | Not Available | Positive | 6296790 - 6297776 | 34269.5 |
| tartrate dehydrogenase | RHPLAN_RS29465 | Not Available | Positive | 6297795 - 6298871 | 39004.1 |
| thioredoxin family protein | RHPLAN_RS29470 | Not Available | Positive | 6298946 - 6299515 | 21367.3 |
| hypothetical protein | RHPLAN_RS29475 | Not Available | Negative | 6299540 - 6299728 | 6588.95 |
| hypothetical protein | RHPLAN_RS29480 | Not Available | Negative | 6299869 - 6300231 | 12870.6 |
| helix-turn-helix transcriptional regulator | RHPLAN_RS29485 | Not Available | Negative | 6300515 - 6301642 | 40515.4 |
| helix-turn-helix domain-containing protein | RHPLAN_RS29490 | Not Available | Positive | 6301902 - 6302837 | 35448.9 |
| gfa family protein | RHPLAN_RS29495 | Not Available | Negative | 6302871 - 6303293 | 14856.0 |
| dsre family protein | RHPLAN_RS29500 | Not Available | Negative | 6303518 - 6304057 | 19604.5 |
| sulfur oxidation c-type cytochrome soxx | RHPLAN_RS29505 | Not Available | Negative | 6304084 - 6304698 | 22299.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.