Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate metabolism protein/1,5-bisphosphokinase (prpp-forming) phnn | RHPLAN_RS29360 | Not Available | Negative | 6276406 - 6278208 | 62953.5 |
| alpha/beta fold hydrolase | RHPLAN_RS29365 | Not Available | Negative | 6278325 - 6279134 | 30600.6 |
| cyclase family protein | RHPLAN_RS29370 | Not Available | Negative | 6279147 - 6279884 | 27072.9 |
| abc transporter permease | RHPLAN_RS29375 | Not Available | Negative | 6279894 - 6280745 | 31390.4 |
| abc transporter atp-binding protein | RHPLAN_RS29380 | Not Available | Negative | 6280742 - 6281551 | 29277.5 |
| abc transporter substrate-binding protein | RHPLAN_RS29385 | Not Available | Negative | 6281567 - 6282511 | 33836.3 |
| arabinose transporter | RHPLAN_RS29390 | Not Available | Positive | 6282839 - 6284041 | 40403.6 |
| carboxymuconolactone decarboxylase family protein | RHPLAN_RS29395 | Not Available | Positive | 6284092 - 6284811 | 25980.2 |
| cupin domain-containing protein | RHPLAN_RS29400 | Not Available | Positive | 6284885 - 6285283 | 14254.7 |
| lysr family transcriptional regulator | RHPLAN_RS29405 | Not Available | Negative | 6285290 - 6286180 | 33030.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.