Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RHPLAN_RS29010 | Not Available | Negative | 6199534 - 6201936 | 86698.7 |
| (2fe-2s)-binding protein | RHPLAN_RS29015 | Not Available | Negative | 6201933 - 6202427 | 17392.9 |
| xanthine dehydrogenase family protein subunit m | RHPLAN_RS29020 | Not Available | Negative | 6202424 - 6203299 | 30351.8 |
| class ii aldolase/adducin family protein | RHPLAN_RS29025 | Not Available | Negative | 6203327 - 6204115 | 29548.3 |
| hpch/hpai aldolase/citrate lyase family protein | RHPLAN_RS29030 | Not Available | Positive | 6204229 - 6205029 | 28618.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS29035 | Not Available | Positive | 6205258 - 6206244 | 34432.1 |
| tripartite tricarboxylate transporter tctb family protein | RHPLAN_RS29040 | Not Available | Positive | 6206413 - 6206865 | 16183.5 |
| tripartite tricarboxylate transporter permease | RHPLAN_RS29045 | Not Available | Positive | 6206875 - 6208371 | 52349.9 |
| amidohydrolase | RHPLAN_RS29050 | Not Available | Negative | 6208557 - 6209480 | 34724.0 |
| zinc-binding dehydrogenase | RHPLAN_RS29055 | Not Available | Negative | 6209577 - 6210542 | 34207.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.