Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS02865 | Not Available | Negative | 602148 - 603125 | 34772.0 |
| amidohydrolase | RHPLAN_RS02870 | Not Available | Positive | 603290 - 605026 | 62633.9 |
| abc transporter atp-binding protein | RHPLAN_RS02875 | Not Available | Positive | 605173 - 605955 | 29195.4 |
| abc transporter substrate-binding protein | RHPLAN_RS02880 | Not Available | Positive | 605952 - 606956 | 36606.4 |
| abc transporter permease | RHPLAN_RS02885 | Not Available | Positive | 606956 - 607753 | 28886.9 |
| abc transporter permease | RHPLAN_RS02890 | Not Available | Positive | 607743 - 608513 | 28165.5 |
| carboxylesterase/lipase family protein | RHPLAN_RS02895 | Not Available | Positive | 608532 - 610031 | 54242.0 |
| isochorismatase family protein | RHPLAN_RS02900 | Not Available | Positive | 610038 - 610745 | 25841.2 |
| cyclase family protein | RHPLAN_RS02905 | Not Available | Positive | 610765 - 611457 | 25301.5 |
| m15 family metallopeptidase | RHPLAN_RS02910 | Not Available | Positive | 611644 - 612327 | 25725.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.