Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | RHPLAN_RS28585 | Not Available | Positive | 6086312 - 6087244 | 33969.4 |
| rhodanese-like domain-containing protein | RHPLAN_RS28590 | Not Available | Positive | 6087360 - 6088118 | 27102.5 |
| eal domain-containing protein | RHPLAN_RS28595 | Not Available | Negative | 6088445 - 6090853 | 87404.0 |
| is5/is1182 family transposase | RHPLAN_RS39790 | Not Available | Negative | 6091630 - 6092104 | 17066.5 |
| abc transporter substrate-binding protein | RHPLAN_RS28600 | Not Available | Positive | 6092427 - 6093404 | 34669.1 |
| rna polymerase sigma factor rpoh | RHPLAN_RS28605 | Not Available | Negative | 6093558 - 6094463 | 34228.9 |
| cold-shock protein | RHPLAN_RS28610 | Not Available | Positive | 6094808 - 6095017 | 7449.8 |
| transcriptional regulator | RHPLAN_RS28615 | Not Available | Positive | 6095139 - 6095399 | 9525.5 |
| fatty acid desaturase | RHPLAN_RS28620 | Not Available | Positive | 6095396 - 6096316 | 34579.5 |
| abc transporter substrate-binding protein | RHPLAN_RS28625 | Not Available | Positive | 6096413 - 6097399 | 34931.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.