Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | RHPLAN_RS28030 | Not Available | Negative | 5943284 - 5944744 | 54472.5 |
| hypothetical protein | RHPLAN_RS28035 | Not Available | Negative | 5945096 - 5945944 | 32666.9 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | RHPLAN_RS28040 | Not Available | Positive | 5946093 - 5946785 | 26190.0 |
| lipopolysaccharide biosynthesis protein | RHPLAN_RS28045 | Not Available | Positive | 5946862 - 5948292 | 50537.6 |
| class i sam-dependent methyltransferase | RHPLAN_RS28050 | Not Available | Negative | 5948215 - 5949018 | 29974.4 |
| endo-1,4-beta-xylanase | RHPLAN_RS28055 | Not Available | Negative | 5949070 - 5950182 | 41952.8 |
| class i sam-dependent methyltransferase | RHPLAN_RS28060 | Not Available | Positive | 5950455 - 5951234 | 29216.1 |
| o-antigen ligase | RHPLAN_RS28065 | Not Available | Negative | 5951279 - 5952688 | 53269.3 |
| udp-glucuronic acid decarboxylase family protein | RHPLAN_RS28070 | Not Available | Negative | 5952728 - 5953672 | 35309.5 |
| udp-glucose/gdp-mannose dehydrogenase family protein | RHPLAN_RS28075 | Not Available | Negative | 5953728 - 5955074 | 48065.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.