Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paai family thioesterase | RHPLAN_RS27680 | Not Available | Negative | 5865681 - 5866142 | 16804.4 |
| zinc-binding dehydrogenase | RHPLAN_RS27685 | Not Available | Negative | 5866139 - 5867143 | 36330.4 |
| cysteine dioxygenase family protein | RHPLAN_RS27690 | Not Available | Negative | 5867171 - 5867740 | 20460.5 |
| alpha/beta fold hydrolase | RHPLAN_RS27695 | Not Available | Negative | 5867940 - 5869013 | 39754.7 |
| ubid family decarboxylase | RHPLAN_RS27700 | Not Available | Positive | 5869111 - 5870709 | 58265.5 |
| amidohydrolase | RHPLAN_RS27705 | Not Available | Positive | 5870904 - 5871755 | 31208.5 |
| abc transporter substrate-binding protein | RHPLAN_RS27710 | Not Available | Positive | 5871800 - 5872696 | 33754.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS27715 | Not Available | Positive | 5872819 - 5873811 | 34503.7 |
| aspartate/glutamate racemase family protein | RHPLAN_RS27720 | Not Available | Positive | 5873835 - 5874590 | 27184.1 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS27725 | Not Available | Positive | 5874766 - 5875737 | 34584.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.