Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter substrate-binding protein | RHPLAN_RS27540 | Not Available | Positive | 5835420 - 5836424 | 36627.2 |
| trap transporter small permease | RHPLAN_RS27545 | Not Available | Positive | 5836553 - 5837089 | 19771.2 |
| trap transporter large permease | RHPLAN_RS27550 | Not Available | Positive | 5837086 - 5838411 | 47111.0 |
| lysr family transcriptional regulator | RHPLAN_RS38585 | Not Available | Negative | 5838743 - 5839618 | 31894.2 |
| is5/is1182 family transposase | RHPLAN_RS38590 | Not Available | Positive | 5839868 - 5840014 | 5869.36 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS27555 | Not Available | Negative | 5840038 - 5841009 | 33587.6 |
| enoyl-coa hydratase-related protein | RHPLAN_RS27560 | Not Available | Positive | 5841167 - 5841958 | 28307.2 |
| urease accessory protein ureg | RHPLAN_RS27565 | Not Available | Negative | 5842722 - 5843342 | 21818.4 |
| urease accessory protein uref | RHPLAN_RS27570 | Not Available | Negative | 5843339 - 5844049 | 24636.4 |
| urease accessory protein uree | RHPLAN_RS27575 | Not Available | Negative | 5844027 - 5844497 | 17015.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.