Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | RHPLAN_RS27390 | Not Available | Positive | 5803936 - 5804733 | 30255.1 |
| duf3617 family protein | RHPLAN_RS27395 | Not Available | Negative | 5804734 - 5805168 | 15664.7 |
| fkbm family methyltransferase | RHPLAN_RS27400 | Not Available | Negative | 5805196 - 5805921 | 27250.6 |
| d-glycero-beta-d-manno-heptose-7-phosphate kinase | RHPLAN_RS27405 | Not Available | Negative | 5805946 - 5807424 | 52553.8 |
| adp-glyceromanno-heptose 6-epimerase | RHPLAN_RS27410 | Not Available | Negative | 5807629 - 5808609 | 36532.6 |
| lipopolysaccharide heptosyltransferase ii | RHPLAN_RS27415 | Not Available | Positive | 5808809 - 5809867 | 38239.9 |
| d-sedoheptulose 7-phosphate isomerase | RHPLAN_RS27420 | Not Available | Positive | 5809906 - 5810505 | 20738.0 |
| had-iiia family hydrolase | RHPLAN_RS27425 | Not Available | Positive | 5810510 - 5811043 | 19535.2 |
| efflux rnd transporter permease subunit | RHPLAN_RS27430 | Not Available | Negative | 5811047 - 5814166 | 111092.0 |
| efflux rnd transporter periplasmic adaptor subunit | RHPLAN_RS27435 | Not Available | Negative | 5814163 - 5815344 | 42467.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.