Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c | RHPLAN_RS26945 | Not Available | Negative | 5703650 - 5704570 | 32916.3 |
| cytochrome c | RHPLAN_RS26950 | Not Available | Negative | 5704690 - 5705124 | 15514.5 |
| cytochrome c | RHPLAN_RS26955 | Not Available | Negative | 5705349 - 5705786 | 15446.4 |
| efflux rnd transporter permease subunit | RHPLAN_RS26960 | Not Available | Negative | 5706001 - 5709162 | 112967.0 |
| efflux rnd transporter periplasmic adaptor subunit | RHPLAN_RS26965 | Not Available | Negative | 5709177 - 5710379 | 42982.4 |
| class i sam-dependent methyltransferase | RHPLAN_RS26970 | Not Available | Positive | 5710571 - 5711365 | 29389.1 |
| nucleotide sugar dehydrogenase | RHPLAN_RS26975 | Not Available | Positive | 5711362 - 5712603 | 45134.8 |
| glycosyltransferase | RHPLAN_RS26980 | Not Available | Positive | 5712621 - 5713379 | 27907.6 |
| nudix domain-containing protein | RHPLAN_RS40635 | Not Available | Positive | 5713384 - 5713938 | 20218.3 |
| hypothetical protein | RHPLAN_RS26990 | Not Available | Negative | 5713910 - 5716090 | 80441.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.