Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2059 domain-containing protein | RHPLAN_RS02475 | Not Available | Negative | 518645 - 519163 | 19050.6 |
| gyri-like domain-containing protein | RHPLAN_RS02480 | Not Available | Negative | 519216 - 519842 | 22339.5 |
| diaminopimelate epimerase | RHPLAN_RS02485 | Not Available | Positive | 520027 - 520908 | 31593.7 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | RHPLAN_RS02490 | Not Available | Positive | 520905 - 522125 | 44641.9 |
| pyridoxamine 5'-phosphate oxidase family protein | RHPLAN_RS02495 | Not Available | Positive | 522153 - 522785 | 23067.1 |
| rlua family pseudouridine synthase | RHPLAN_RS02500 | Not Available | Negative | 522792 - 523562 | 28367.5 |
| signal recognition particle-docking protein ftsy | RHPLAN_RS02505 | Not Available | Positive | 523590 - 524546 | 33085.1 |
| mate family efflux transporter | RHPLAN_RS02510 | Not Available | Positive | 524589 - 525968 | 47099.8 |
| septation protein a | RHPLAN_RS02515 | Not Available | Positive | 525978 - 526631 | 24214.5 |
| hypothetical protein | RHPLAN_RS02520 | Not Available | Positive | 526765 - 527193 | 15120.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.