Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | RHPLAN_RS02025 | Not Available | Positive | 438267 - 439907 | 60763.6 |
| rida family protein | RHPLAN_RS02030 | Not Available | Positive | 439983 - 440444 | 16887.1 |
| xaa-pro peptidase family protein | RHPLAN_RS02035 | Not Available | Positive | 440504 - 441682 | 42281.8 |
| is630 family transposase | RHPLAN_RS38080 | Not Available | Positive | 441773 - 442721 | 35933.7 |
| carboxymuconolactone decarboxylase family protein | RHPLAN_RS02050 | Not Available | Negative | 442855 - 443517 | 24995.6 |
| flp pilus assembly protein cpab | RHPLAN_RS02055 | Not Available | Positive | 443905 - 444783 | 30886.2 |
| type ii and iii secretion system protein family protein | RHPLAN_RS02060 | Not Available | Positive | 444833 - 446395 | 55004.2 |
| hypothetical protein | RHPLAN_RS02065 | Not Available | Positive | 446403 - 446753 | 12096.0 |
| response regulator receiver protein | RHPLAN_RS02070 | Not Available | Positive | 446792 - 448003 | 44024.3 |
| cpaf family protein | RHPLAN_RS02075 | Not Available | Positive | 448175 - 449494 | 48429.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.