Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit epsilon | RHPLAN_RS01285 | Not Available | Positive | 285257 - 285982 | 26961.4 |
| protein-export chaperone secb | RHPLAN_RS01290 | Not Available | Negative | 285993 - 286484 | 17486.1 |
| fxsa family protein | RHPLAN_RS01295 | Not Available | Negative | 286601 - 287086 | 17601.0 |
| tim44/tima family putative adaptor protein | RHPLAN_RS01300 | Not Available | Positive | 287293 - 287997 | 25845.5 |
| murein transglycosylase a | RHPLAN_RS01305 | Not Available | Positive | 287994 - 289424 | 52290.1 |
| smr/muts family protein | RHPLAN_RS01310 | Not Available | Positive | 289421 - 289987 | 19995.5 |
| abrb/maze/spovt family dna-binding domain-containing protein | RHPLAN_RS01315 | Not Available | Positive | 290107 - 290349 | 8498.4 |
| type ii toxin-antitoxin system pemk/mazf family toxin | RHPLAN_RS01320 | Not Available | Positive | 290367 - 290681 | 11119.5 |
| llm class flavin-dependent oxidoreductase | RHPLAN_RS01325 | Not Available | Negative | 290704 - 291810 | 40977.4 |
| duf6481 family protein | RHPLAN_RS01330 | Not Available | Negative | 291940 - 292338 | 14996.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.