Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | RHPLAN_RS01240 | Not Available | Negative | 275477 - 276823 | 48682.2 |
| hypothetical protein | RHPLAN_RS38930 | Not Available | Positive | 276854 - 277198 | 12646.9 |
| cold-shock protein | RHPLAN_RS01245 | Not Available | Negative | 277185 - 277388 | 7293.62 |
| thioredoxin domain-containing protein | RHPLAN_RS01250 | Not Available | Positive | 277554 - 279605 | 75652.8 |
| transcription termination factor rho | RHPLAN_RS01255 | Not Available | Negative | 279747 - 281012 | 47144.9 |
| protoporphyrinogen oxidase hemj | RHPLAN_RS01260 | Not Available | Negative | 281262 - 281684 | 16197.6 |
| uroporphyrinogen decarboxylase | RHPLAN_RS01265 | Not Available | Negative | 281757 - 282791 | 37605.8 |
| pyruvate, water dikinase regulatory protein | RHPLAN_RS01270 | Not Available | Positive | 283156 - 283998 | 30920.2 |
| maf family protein | RHPLAN_RS01275 | Not Available | Positive | 284011 - 284619 | 21655.2 |
| dephospho-coa kinase | RHPLAN_RS01280 | Not Available | Positive | 284625 - 285221 | 21250.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.