Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | RHPLAN_RS01140 | Not Available | Negative | 251465 - 252157 | 24610.7 |
| duf2171 domain-containing protein | RHPLAN_RS01145 | Not Available | Negative | 252244 - 252477 | 8732.3 |
| tetratricopeptide repeat protein | RHPLAN_RS01150 | Not Available | Negative | 252557 - 253957 | 51454.0 |
| eal domain-containing protein | RHPLAN_RS01155 | Not Available | Negative | 254057 - 256711 | 96118.2 |
| aldo/keto reductase | RHPLAN_RS01160 | Not Available | Negative | 256867 - 257826 | 34427.7 |
| taxi family trap transporter solute-binding subunit | RHPLAN_RS01165 | Not Available | Negative | 257852 - 259276 | 50320.1 |
| branched-chain amino acid abc transporter substrate-binding protein | RHPLAN_RS01170 | Not Available | Positive | 259483 - 260658 | 41832.9 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS01175 | Not Available | Positive | 260834 - 261751 | 31999.3 |
| branched-chain amino acid abc transporter permease | RHPLAN_RS01180 | Not Available | Positive | 261748 - 262914 | 41667.5 |
| abc transporter atp-binding protein | RHPLAN_RS01185 | Not Available | Positive | 262911 - 263687 | 28920.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.