Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protocatechuate 4,5-dioxygenase subunit alpha | RHPLAN_RS00055 | Not Available | Positive | 15505 - 15846 | 12129.5 |
| class iii extradiol dioxygenase family protein | RHPLAN_RS00060 | Not Available | Positive | 15849 - 16709 | 31323.8 |
| rieske 2fe-2s domain-containing protein | RHPLAN_RS00065 | Not Available | Positive | 16953 - 18239 | 48215.4 |
| 3-hydroxybenzoate 6-monooxygenase | RHPLAN_RS00070 | Not Available | Positive | 18273 - 19457 | 43235.0 |
| cupin domain-containing protein | RHPLAN_RS00075 | Not Available | Positive | 19482 - 20525 | 38319.2 |
| voc family protein | RHPLAN_RS00080 | Not Available | Positive | 20552 - 21451 | 33925.9 |
| alpha/beta fold hydrolase | RHPLAN_RS00085 | Not Available | Positive | 21635 - 22792 | 41947.3 |
| s1c family serine protease | RHPLAN_RS00090 | Not Available | Negative | 22966 - 23862 | 31086.4 |
| phasin family protein | RHPLAN_RS00095 | Not Available | Negative | 24062 - 24397 | 11803.7 |
| cbs domain-containing protein | RHPLAN_RS00100 | Not Available | Negative | 24502 - 24948 | 17015.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.