Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS00835 | Not Available | Positive | 183436 - 184425 | 34561.7 |
| mmge/prpd family protein | RHPLAN_RS00840 | Not Available | Positive | 184498 - 185892 | 49837.6 |
| hypothetical protein | RHPLAN_RS00845 | Not Available | Positive | 185903 - 186733 | 29923.2 |
| response regulator transcription factor | RHPLAN_RS00850 | Not Available | Positive | 187647 - 188312 | 24870.6 |
| circadian clock kaib family protein | RHPLAN_RS00855 | Not Available | Positive | 188500 - 188820 | 11780.3 |
| circadian clock protein kaic | RHPLAN_RS00860 | Not Available | Positive | 188820 - 190331 | 55027.2 |
| response regulator | RHPLAN_RS00865 | Not Available | Positive | 190328 - 192193 | 66961.8 |
| Trna-thr | Not Available | Not Available | Positive | 192377 - 192451 | Not Available |
| heme biosynthesis protein hemy | RHPLAN_RS00875 | Not Available | Negative | 192706 - 194322 | 57421.7 |
| cog4223 family protein | RHPLAN_RS00880 | Not Available | Negative | 194336 - 195676 | 46630.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.